PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676709362
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HB-other
Protein Properties Length: 135aa    MW: 15915.9 Da    PI: 9.795
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676709362genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.2e-201977357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  676709362 19 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPRQIKVWFQNRRCREKQ 77
               5679*****************************************************97 PP

2bZIP_122.23.1e-07711131860
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                rr+R++ ++e ++L++   +L+a Nk L +e+++l+k+v+ l 
  676709362  71 RRCREKQRKESARLQTVNRKLSAMNKLLMEENDRLQKQVSHLV 113
                9**************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-20374IPR009057Homeodomain-like
PROSITE profilePS5007115.4511478IPR001356Homeobox domain
SMARTSM003894.2E-161682IPR001356Homeobox domain
SuperFamilySSF466894.71E-181881IPR009057Homeodomain-like
CDDcd000861.50E-141979No hitNo description
PfamPF000461.1E-171977IPR001356Homeobox domain
CDDcd146866.99E-471110No hitNo description
Gene3DG3DSA:1.20.5.1705.8E-475112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MGHSMDDRDS PDKGFDSGKY VRYTPEQVEA LERVYAECPK PSSLRRQQLI RECPILCNIE  60
PRQIKVWFQN RRCREKQRKE SARLQTVNRK LSAMNKLLME ENDRLQKQVS HLVYENGFMK  120
HRINTAPGTT TDNSX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532581e-159AK353258.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480757.16e-89PREDICTED: homeobox-leucine zipper protein ATHB-9-like
RefseqXP_010501662.11e-92PREDICTED: homeobox-leucine zipper protein ATHB-9-like
SwissprotO042923e-88ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBLR0GUM62e-88R0GUM6_9BRAS; Uncharacterized protein
STRINGBra032394.1-P2e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1807459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.12e-89HD-ZIP family protein